Package: baycn 1.3.0

baycn: Bayesian Inference for Causal Networks

An approximate Bayesian method for inferring Directed Acyclic Graphs (DAGs) for continuous, discrete, and mixed data. The algorithm can use the graph inferred by another more efficient graph inference method as input; the input graph may contain false edges or undirected edges but can help reduce the search space to a more manageable size. A Markov chain Monte Carlo-like algorithm is then used to infer the posterior probabilities of edge direction and edge absence. References: Martin and Fu (2019) <doi:10.48550/arXiv.1909.10678>.

Authors:Evan A Martin [aut, cre], Venkata Patchigolla [ctb], Audrey Fu [aut]

baycn_1.3.0.tar.gz
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baycn_1.3.0.tgz(r-4.6-any)baycn_1.3.0.tgz(r-4.5-any)
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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
baycn/json (API)

# Install 'baycn' in R:
install.packages('baycn', repos = c('https://evanamartin.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/evanamartin/baycn/issues

Datasets:
  • drosophila - Tissue type and transcription factor binding data during Drosophila mesoderm development
  • geuvadis - Genotype and gene expression data from the GEUVADIS project

On CRAN:

Conda:

directed-acyclic-graphgene-regulatory-network

3.30 score 4 stars 1 scripts 545 downloads 10 exports 30 dependencies

Last updated from:98efa19288. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develNOTE127
source / vignettesOK157
linux-releaseNOTE149
macos-releaseNOTE189
macos-oldrelNOTE245
windows-develNOTE90
windows-releaseNOTE78
windows-oldrelNOTE70
wasm-releaseOK90

Exports:coordinatescycleFndrmhEdgemseplotprerecshowsimdatasummarytracePlot

Dependencies:clicodetoolscpp11doParalleleggfarverforeachggplot2gluegridExtragtablegtoolsigraphisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixpkgconfigR6RColorBrewerrlangS7scalesvctrsviridisLitewithr