Package: baycn 1.3.0
baycn: Bayesian Inference for Causal Networks
An approximate Bayesian method for inferring Directed Acyclic Graphs (DAGs) for continuous, discrete, and mixed data. The algorithm can use the graph inferred by another more efficient graph inference method as input; the input graph may contain false edges or undirected edges but can help reduce the search space to a more manageable size. A Markov chain Monte Carlo-like algorithm is then used to infer the posterior probabilities of edge direction and edge absence. References: Martin and Fu (2019) <doi:10.48550/arXiv.1909.10678>.
Authors:
baycn_1.3.0.tar.gz
baycn_1.3.0.zip(r-4.7)baycn_1.3.0.zip(r-4.6)baycn_1.3.0.zip(r-4.5)
baycn_1.3.0.tgz(r-4.6-any)baycn_1.3.0.tgz(r-4.5-any)
baycn_1.3.0.tar.gz(r-4.7-any)baycn_1.3.0.tar.gz(r-4.6-any)
baycn_1.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
baycn/json (API)
| # Install 'baycn' in R: |
| install.packages('baycn', repos = c('https://evanamartin.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/evanamartin/baycn/issues
- drosophila - Tissue type and transcription factor binding data during Drosophila mesoderm development
- geuvadis - Genotype and gene expression data from the GEUVADIS project
directed-acyclic-graphgene-regulatory-network
Last updated from:98efa19288. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 142 | ||
| source / vignettes | OK | 162 | ||
| linux-release-x86_64 | NOTE | 143 | ||
| macos-release-arm64 | NOTE | 175 | ||
| macos-oldrel-arm64 | NOTE | 164 | ||
| windows-devel | NOTE | 107 | ||
| windows-release | NOTE | 97 | ||
| windows-oldrel | NOTE | 79 | ||
| wasm-release | OK | 106 |
Exports:coordinatescycleFndrmhEdgemseplotprerecshowsimdatasummarytracePlot
Dependencies:clicodetoolscpp11doParalleleggfarverforeachggplot2gluegridExtragtablegtoolsigraphisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixpkgconfigR6RColorBrewerrlangS7scalesvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| baycn class | baycn-class |
| coordinates | coordinates |
| cycleFndr | cycleFndr |
| Tissue type and transcription factor binding data during Drosophila mesoderm development | drosophila |
| Genotype and gene expression data from the GEUVADIS project | geuvadis |
| mhEdge | mhEdge |
| mse | mse |
| plot | plot,baycn-method |
| prerec | prerec |
| show | show,baycn-method |
| simdata | simdata |
| summary | summary,baycn-method |
| tracePlot | tracePlot |
