Package: baycn 1.3.0

baycn: Bayesian Inference for Causal Networks

An approximate Bayesian method for inferring Directed Acyclic Graphs (DAGs) for continuous, discrete, and mixed data. The algorithm can use the graph inferred by another more efficient graph inference method as input; the input graph may contain false edges or undirected edges but can help reduce the search space to a more manageable size. A Markov chain Monte Carlo-like algorithm is then used to infer the posterior probabilities of edge direction and edge absence. References: Martin and Fu (2019) <doi:10.48550/arXiv.1909.10678>.

Authors:Evan A Martin [aut, cre], Venkata Patchigolla [ctb], Audrey Fu [aut]

baycn_1.3.0.tar.gz
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baycn_1.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION
card.svg |card.png
baycn/json (API)

# Install 'baycn' in R:
install.packages('baycn', repos = c('https://evanamartin.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/evanamartin/baycn/issues

Datasets:
  • drosophila - Tissue type and transcription factor binding data during Drosophila mesoderm development
  • geuvadis - Genotype and gene expression data from the GEUVADIS project

On CRAN:

Conda:

directed-acyclic-graphgene-regulatory-network

3.18 score 3 stars 1 scripts 824 downloads 10 exports 30 dependencies

Last updated from:98efa19288. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE142
source / vignettesOK162
linux-release-x86_64NOTE143
macos-release-arm64NOTE175
macos-oldrel-arm64NOTE164
windows-develNOTE107
windows-releaseNOTE97
windows-oldrelNOTE79
wasm-releaseOK106

Exports:coordinatescycleFndrmhEdgemseplotprerecshowsimdatasummarytracePlot

Dependencies:clicodetoolscpp11doParalleleggfarverforeachggplot2gluegridExtragtablegtoolsigraphisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixpkgconfigR6RColorBrewerrlangS7scalesvctrsviridisLitewithr