{ "_id": "6a0f63c1acfb0bcc41c5c947", "Encoding": "UTF-8", "Package": "baycn", "Type": "Package", "Title": "Bayesian Inference for Causal Networks", "Version": "1.3.0", "Authors@R": "c(person(given = c(\"Evan\", \"A\"),\nfamily = \"Martin\",\nrole = c(\"aut\", \"cre\"),\nemail = \"evanamartin@gmail.com\"),\nperson(given = \"Venkata\",\nfamily = \"Patchigolla\",\nrole = \"ctb\"),\nperson(given = \"Audrey\",\nfamily = \"Fu\",\nrole = \"aut\"))", "Description": "An approximate Bayesian method for inferring Directed\nAcyclic Graphs (DAGs) for continuous, discrete, and mixed data.\nThe algorithm can use the graph inferred by another more\nefficient graph inference method as input; the input graph may\ncontain false edges or undirected edges but can help reduce the\nsearch space to a more manageable size. A Markov chain Monte\nCarlo-like algorithm is then used to infer the posterior\nprobabilities of edge direction and edge absence. References:\nMartin and Fu (2019) .", "License": "GPL-3 | file LICENSE", "LazyData": "true", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "libglpk-dev libxml2-dev", "Repository": "https://evanamartin.r-universe.dev", "Date/Publication": "2025-11-07 16:53:51 UTC", "RemoteUrl": "https://github.com/evanamartin/baycn", "RemoteRef": "HEAD", "RemoteSha": "98efa1928830b8ba2a24941be1975d4c793c2245", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-21 10:27:09 UTC", "User": "root" }, "Author": "Evan A Martin [aut, cre],\nVenkata Patchigolla [ctb],\nAudrey Fu [aut]", "Maintainer": "Evan A Martin ", "MD5sum": "35e672c99217a4bc587bc94d23feb6b2", "_user": "evanamartin", "_type": "src", "_file": "baycn_1.3.0.tar.gz", "_fileid": "9d1994515cf325a0b29497835596f2c49c1fe797eaacf4932102646e1c5f613d", "_filesize": 5541436, "_sha256": "9d1994515cf325a0b29497835596f2c49c1fe797eaacf4932102646e1c5f613d", "_created": "2026-05-21T10:27:09.000Z", "_published": "2026-05-21T19:57:53.069Z", "_distro": "noble", "_jobs": [ { "job": 77257089981, "time": 135, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7133372666" }, { "job": 77257089977, "time": 128, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7133370083" }, { "job": 77257090166, "time": 134, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7133378413" }, { "job": 77257089658, "time": 137, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7133378620" }, { "job": 77257089320, "time": 184, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7133327619" }, { "job": 77257088905, "time": 114, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7145840164" }, { "job": 77257089304, "time": 131, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7133370828" }, { "job": 77257090118, "time": 86, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7133356677" }, { "job": 77257089661, "time": 90, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7133358155" } ], "_buildurl": "https://github.com/r-universe/evanamartin/actions/runs/26220247607", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/evanamartin/baycn", "_commit": { "id": "98efa1928830b8ba2a24941be1975d4c793c2245", "author": "Audrey Fu ", "committer": "Audrey Fu ", "message": "Parallel cluster connection clean up\n\nAny function that creates a cluster should clean it up, even if there's an error.\n", "time": 1762534431 }, "_maintainer": { "name": "Evan A Martin", "email": "evanamartin@gmail.com", "login": "evanamartin", "description": "", "uuid": 14840192 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "egg", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "gtools", "role": "Imports" }, { "package": "igraph", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "foreach", "role": "Imports" }, { "package": "doParallel", "role": "Imports" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "evanamartin", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-45", "n": 3 } ], "_tags": [], "_topics": [ "directed-acyclic-graph", "gene-regulatory-network" ], "_stars": 3, "_contributors": [ { "user": "evanamartin", "count": 28, "uuid": 14840192 }, { "user": "audreyqyfu", "count": 3, "uuid": 12000393 } ], "_userbio": { "uuid": 14840192, "type": "user", "name": "Evan A Martin" }, "_downloads": { "count": 847, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/baycn" }, "_devurl": "https://github.com/evanamartin/baycn", "_searchresults": 1, "_rbuild": "4.6.0", "_assets": [ "extra/baycn.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/evanamartin/baycn", "_realowner": "evanamartin", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2019-10-01" }, { "version": "1.1.0", "date": "2020-03-10" }, { "version": "1.2.0", "date": "2020-07-31" }, { "version": "2.0.0", "date": "2026-03-10" } ], "_exports": [ "coordinates", "cycleFndr", "mhEdge", "mse", "plot", "prerec", "show", "simdata", "summary", "tracePlot" ], "_datasets": [ { "name": "drosophila", "title": "Tissue type and transcription factor binding data during Drosophila mesoderm development", "object": "drosophila", "class": [ "list" ], "fields": [], "table": true, "tojson": true }, { "name": "geuvadis", "title": "Genotype and gene expression data from the GEUVADIS project", "object": "geuvadis", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "baycn-class", "title": "baycn class", "topics": [ "baycn-class" ] }, { "page": "coordinates", "title": "coordinates", "topics": [ "coordinates" ] }, { "page": "cycleFndr", "title": "cycleFndr", "topics": [ "cycleFndr" ] }, { "page": "drosophila", "title": "Tissue type and transcription factor binding data during Drosophila mesoderm development", "topics": [ "drosophila" ] }, { "page": "geuvadis", "title": "Genotype and gene expression data from the GEUVADIS project", "topics": [ "geuvadis" ] }, { "page": "MHEdge", "title": "mhEdge", "topics": [ "mhEdge" ] }, { "page": "mse", "title": "mse", "topics": [ "mse" ] }, { "page": "plot-baycn-method", "title": "plot", "topics": [ "plot,baycn-method" ] }, { "page": "prerec", "title": "prerec", "topics": [ "prerec" ] }, { "page": "show-baycn-method", "title": "show", "topics": [ "show,baycn-method" ] }, { "page": "simdata", "title": "simdata", "topics": [ "simdata" ] }, { "page": "summary-baycn-method", "title": "summary", "topics": [ "summary,baycn-method" ] }, { "page": "tracePlot", "title": "tracePlot", "topics": [ "tracePlot" ] } ], "_readme": "https://github.com/evanamartin/baycn/raw/HEAD/README.md", "_rundeps": [ "cli", "codetools", "cpp11", "doParallel", "egg", "farver", "foreach", "ggplot2", "glue", "gridExtra", "gtable", "gtools", "igraph", "isoband", "iterators", "labeling", "lattice", "lifecycle", "magrittr", "MASS", "Matrix", "pkgconfig", "R6", "RColorBrewer", "rlang", "S7", "scales", "vctrs", "viridisLite", "withr" ], "_score": 3.1760912590556813, "_indexed": true, "_nocasepkg": "baycn", "_universes": [ "evanamartin" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.3.0", "date": "2026-05-21T10:29:16.000Z", "distro": "noble", "commit": "98efa1928830b8ba2a24941be1975d4c793c2245", "fileid": "c5b7836726fc45c3cb84baf74a2ea60ce0fdba087ca8af3385c03574ad58be75", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/evanamartin/actions/runs/26220247607" }, { "r": "4.6.0", "os": "linux", "version": "1.3.0", "date": "2026-05-21T10:29:08.000Z", "distro": "noble", "commit": "98efa1928830b8ba2a24941be1975d4c793c2245", "fileid": "0bf5141744905a4bd18060a1b12ab44b39988d19758f0c0a231e0fcb8fc49c9b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/evanamartin/actions/runs/26220247607" }, { "r": "4.5.3", "os": "mac", "version": "1.3.0", "date": "2026-05-21T10:29:48.000Z", "commit": "98efa1928830b8ba2a24941be1975d4c793c2245", "fileid": "1cf4cb85a646eed32ad8fd006b1882f44e3b7ed3bedae3f001bd8d06020fe739", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/evanamartin/actions/runs/26220247607" }, { "r": "4.6.0", "os": "mac", "version": "1.3.0", "date": "2026-05-21T10:29:45.000Z", "commit": "98efa1928830b8ba2a24941be1975d4c793c2245", "fileid": "6a583fc14dab3faef650337188ac1ab0b13d5d74a73984f497d9732b6e400519", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/evanamartin/actions/runs/26220247607" }, { "r": "4.6.0", "os": "wasm", "version": "1.3.0", "date": "2026-05-21T19:57:35.000Z", "commit": "98efa1928830b8ba2a24941be1975d4c793c2245", "fileid": "5c3add81d6c1562623496607ebe35bd248f31c2dfca7af3ea7fcad7bc170aec1", "status": "success", "buildurl": "https://github.com/r-universe/evanamartin/actions/runs/26220247607" }, { "r": "4.7.0", "os": "win", "version": "1.3.0", "date": "2026-05-21T10:28:46.000Z", "commit": "98efa1928830b8ba2a24941be1975d4c793c2245", "fileid": "037cbffb15a03c2885d618de531bccb3324742b37355dacfc328dfeec21642c7", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/evanamartin/actions/runs/26220247607" }, { "r": "4.5.3", "os": "win", "version": "1.3.0", "date": "2026-05-21T10:28:23.000Z", "commit": "98efa1928830b8ba2a24941be1975d4c793c2245", "fileid": "807d94a98bf0c6be27d584bf7aeff05d00d67a0474018a3b460326b288d2337a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/evanamartin/actions/runs/26220247607" }, { "r": "4.6.0", "os": "win", "version": "1.3.0", "date": "2026-05-21T10:28:24.000Z", "commit": "98efa1928830b8ba2a24941be1975d4c793c2245", "fileid": "df2d2a6722f3115f037a5463161969e5bf6c1d86dc2161122c62d0f37a376383", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/evanamartin/actions/runs/26220247607" } ] }